VMDextensions.tcl File Reference

Functions
	forFrames framenum sel block ?step?
	forFramesMeasure framenum sel block
	forFiles filename pattern block
	residueContacts cutoff query target
	residueContactPairs cutoff sel1 sel2
	firstContactTimeMatrix cutoff sel1 sel2
	prepareNativeContacts cutoff sel1 ?sel2?
	measureNativeContacts nclist cutoff sel1 ?sel2?
	residueDistanceMatrix sel1 sel2
	residueDistanceMatrixApprox sel1 sel2 bins
	atomDistanceMatrix sel1 sel2
	distanceProfileFull lig prot ?step? ?dbins?
	distanceProfile lig prot ?dbins?
	qplot li ?ly?
	qhist bins li
	loadFrames pattern
	appendFrames pattern
	identifyFrame
	renumber sel start
	renumber_from_1 sel
	helicity sel ?tol?
	helicity_3 sel ?tol? ?debug?
	atomselectRefine sel txt
	veccenter l
	vecangle d1 d2
	transinertia sel
	boundingBoxCenter sel
	minDist s1 s2
	addCaps sel ?cap?
	addCaps2 sel ?cap?
	moveSelTo s1 dest
	swap s1 s2
	rmsdOf sel1 sel2 ref1 ref2
	rmsfTrajectory sel ?win? ?step?
	rmsfTrajectoryColor sel ?win?
	readXYZUser fn
	setBondsFromTpr fn
	writePQR sel filename
	writePlumed sel filename
	writePlumedRef sel filename
	writePDBTER sel fname
	writeNullVelFile as fname
	getFasta osel
	labelAtoms txt ?sel?
	saveFullState ?file?
	dumpRepresentations
	transpose matrix
	lseq from to ?step?
	arrayIndices arr
	printTable ll ?prepend? ?ch? ?fmt?
	printArray tmp ?prepend? ?ch? ?fmt?
	reshapeLongToArray table
	reshapeArrayToWide tmp
	reshapeLongToWide table
	reshapeArrayToLong tmp
	asel args
	ssel str
	asel_free